Robert A. Petit III, PhD

Robert A. Petit III, PhD rpetit3

Bioinformatician studying bacterial genomics and developer of Bactopia and Staphopia workflows.

Wyoming Public Health Laboratory
Microbiology Laboratories
Cheyenne, WY
robbie.petit@gmail.com
Curriculum Vitae
Resume

Organizations

4 results for Typing

Fine-scale differentiation between Bacillus anthracis and Bacillus cereus group signatures in metagenome shotgun data
We developed a model to differentiate Bacillus anthracis, the etiologic agent of anthrax, from the closely related (>99% average nucleotide identity) Bacillus cereus group members in metagenome sequences.
anthrax bacillus metagenomic typing Published Wed, 01 Aug 2018 00:00:00 +0000
Read classification for next generation sequencing
Here we apply an SVM classifier to distinguishing Staphylococcus aureus sequencing projects from other pathogens, including closely related Staphylococci.
genomic staphylococcus typing Published Mon, 01 Apr 2013 00:00:00 +0000
sccmec
A tool for typing SCCmec cassettes in assemblies
sccmec staphopia typing
staphopia-sccmec
A standalone version of Staphopia’s SCCmec typing method.
sccmec staphopia typing