Robert A. Petit III, PhD

Robert A. Petit III, PhD rpetit3

A classically trained bioinformatician working on bacterial genomics, Bactopia, and local inference of open-weight models.

Wyoming Public Health Laboratory
Microbiology Laboratories
Cheyenne, WY
robbie.petit@gmail.com
Curriculum Vitae
Resume

Organizations

21 results for Tools

genome-dl
Download genomes from NCBI Datasets
genomic sequencing tools
goblin
GOBLIN - Generate trusted prOteins to supplement BacteriaL annotatIoN
bioconda genomic tools
nf-bactopia
A Nextflow plugin for Bactopia
bactopia nextflow tools
pasty
A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
bioconda genomic tools
pbptyper
In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies
bioconda genomic tools
pmga
A fork of PMGA (PubMLST Genome Annotator) for all Neisseria species and Haemophilus influenzae
bioconda genomic tools
s3tools
Simple S3 scripts using Boto for Staphopia
staphopia tools
sizemeup
A simple tool to determine the genome size of an organism
bioconda genomic tools
staphopia-r
An R library to extract data from Staphopia’s API (archived)
staphopia tools
steamboat-py
A collection of tools and scripts for microbial bioinformatics
tools