Robert A. Petit III, PhD rpetit3

Fast, efficient public health actions require well-organized and coordinated systems that can supply timely and accurate knowledge.

We report evidence that WGS can complement epidemiological analysis to achieve the End TB strategy goal in Oman.

We report direct S. aureus antibiotic resistance genotype inference using rapid nanopore sequencing from clinical samples

We report the effects of shiftwork on the intestinal microbiome.

we present the whole-genome sequences of 65 Staphylococcus aureus isolates obtained from 50 individuals with cystic fibrosis.

The methods used in Bactopia for read QC

Download FASTQ files from ENA (archived)

Download FASTQ files from SRA or ENA repositories.

Output FASTQ summary statistics in JSON format

Download genomes from NCBI Datasets