Methods on Robert A. Petit III, PhD

Mycobacteria Amplicon Sequencing Tool: automated resistance prediction and lineage classification for Mycobacterium tuberculosis

Mon, 27 Apr 2026 00:00:00 +0000

ABSTRACT The Mycobacteria Amplicon Sequencing Tool ( https://github.com/guthrielab/MAST ) is a modular Nextflow pipeline for antimicrobial resistance prediction and lineage classification of…

camlhmp: a simple framework for building reproducible microbial genome-based typing tools

Mon, 20 Apr 2026 00:00:00 +0000

Sequence-based typing is critical for microbial genomics, yet existing tools are often developed in isolation, leading to duplicated effort, inconsistent formats, and limited community participation.

CAMP: a modular metagenomics analysis system for integrated multistep data exploration

Thu, 30 Oct 2025 00:00:00 +0000

Computational analysis of large-scale metagenomics sequencing datasets provides valuable isolate-level taxonomic and functional insights from complex microbial communities.

hAMRoaster: a tool for comparing performance of AMR gene detection software

Thu, 13 Jan 2022 00:00:00 +0000

We report hAMRoaster for assessing accuracy of prediction of antibiotic resistance phenotypes

assembly-scan