Robert A. Petit III, PhD rpetit3

ABSTRACT The Mycobacteria Amplicon Sequencing Tool ( https://github.com/guthrielab/MAST ) is a modular Nextflow pipeline for antimicrobial resistance prediction and lineage classification of…

Sequence-based typing is critical for microbial genomics, yet existing tools are often developed in isolation, leading to duplicated effort, inconsistent formats, and limited community participation.

Computational analysis of large-scale metagenomics sequencing datasets provides valuable isolate-level taxonomic and functional insights from complex microbial communities.

We report hAMRoaster for assessing accuracy of prediction of antibiotic resistance phenotypes

Generate basic stats for an assembly

Contains data used by Bactopia for testing

An accumulation of things related to bioinformatics training

Classification through YAML Heuristic Mapping Protocol

Tests to determine the most efficient way to store DNA k-mers

Output FASTQ summary statistics in JSON format