Robert A. Petit III, PhD

Robert A. Petit III, PhD rpetit3

A classically trained bioinformatician working on bacterial genomics, Bactopia, and local inference of open-weight models.

Organizations

4 results for Ecology

Genomic Dynamics of the Emergent Candida auris: Exploring Climate-dependent Trends
Candidozyma auris (formerly known as Candida auris) (C auris) is a multidrug-resistant fungal pathogen that has emerged as a significant threat to global health.
ecology genomic pathogens Published Fri, 25 Jul 2025 00:00:00 +0000
Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures
We report comparisons between WGS and DNA metabarcoding for plant species identification.
ecology tools Published Thu, 04 Nov 2021 00:00:00 +0000
A global metagenomic map of urban microbiomes and antimicrobial resistance
We present a global atlas of 4,728 metagenomic samples from mass-transit systems in 60 cities over 3 years, representing the first systematic, worldwide catalog of the urban microbial ecosystem.
ecology resistance Published Wed, 26 May 2021 00:00:00 +0000
Genotypic and Phenotypic Diversity of Staphylococcus aureus Isolates from Cystic Fibrosis Patient Lung Infections and Their Interactions with Pseudomonas aeruginosa
Our work provides greater insight into the diversity of Staphylococcus aureus isolates from cystic fibrosis patients, specifically the distribution of important virulence factors and their interaction with Pseudomonas aeruginosa, all of which have implications in patient health.
ecology pathogens phylogeny staphylococcus Published Tue, 23 Jun 2020 00:00:00 +0000