<?xml version="1.0" encoding="utf-8" standalone="yes"?><urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9" xmlns:xhtml="http://www.w3.org/1999/xhtml"><url><loc>https://www.robertpetit.com/tags/methods/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2026-mycobacteria-amplicon-sequencing-tool-automated-resistance/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/pathogens/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/resistance/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2026-camlhmp-simple-framework-building-reproducible-microbial-genome/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/tools/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/typing/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/genomic/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/staphylococcus/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2026-transition-staphylococcus-aureus-tetracycline-resistance-plasmid/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2026-pangenome-gwas-analysis-clostridioides-difficile-resistant-traits/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/surveillance/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2025-camp-modular-metagenomics-analysis-system-integrated-multistep-data/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/ecology/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2025-genomic-dynamics-emergent-candida-auris-exploring-climate-dependent/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2025-comparative-genomic-analysis-emerging-non-typeable-haemophilus/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2024-average-nucleotide-identity-based-staphylococcus-aureus-strain/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/data/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2024-pha4ge-quality-control-contextual-data-tags-standardized/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2024-strain-differences-bloodstream-skin-infection-methicillin-resistant/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2023-putting-everything-its-place-using-insdc-compliant-pathogen-data/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/sequencing/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2023-oman-tb/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2023-accelerating-bioinformatics-implementation-public-health/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2023-staph-accessory/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2023-saureus-amplicon/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2022-mrsa-bloodstream/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/virulence/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2022-mcr9/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2022-secretor-status/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/microbiome/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2022-early-covid/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2022-staph-agr/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2022-staph-phage/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2022-hamroaster/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2021-pollen-id/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2021-global-metagenomic-map-urban-microbiomes-antimicrobial-resistance/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2021-shiftwork/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2020-molecular-epidemiology-outcomes-patients-carbapenem-resistant/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/bactopia/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2020-bactopia/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/nextflow/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2020-cfstaph/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/phylogeny/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2020-deltatoxin/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2019-nthi-epi/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2019-saureus-heme/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2019-saureus-cf-mra/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2018-usa300-persists/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2018-bacillus-anthracis/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2018-staphopia/</loc><lastmod>2026-11-14T03:46:53+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/staphopia/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/license/</loc><lastmod>2026-11-14T03:46:53+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2018-usa500/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2017-whale-shark-draft-genome/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2016-saureus-in-metagenomes/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2015-usa300-chicago/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2014-visa-gwas/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2014-whale-shark-mitochondria/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2014-vancomycin-descriminator/</loc><lastmod>2026-11-14T03:46:53+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2013-read-classifier/</loc><lastmod>2026-11-14T03:46:53+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/2011-hhaemolyticus/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/about/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/any2tsv/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/assembly/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/assembly-scan/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/bactopia/</loc><lastmod>2026-11-14T03:46:53+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/bactopia-assembler/</loc><lastmod>2026-11-14T03:46:53+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/bactopia-gather/</loc><lastmod>2026-11-14T03:46:53+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/bactopia-py/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/bactopia-qc/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/bactopia-sketcher/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/bactopia-tests/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/bactopia-teton/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/bactopia-variants/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/bactopia-wdl/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/binf-training/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/bioconda/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/call_variants/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/camlhmp/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/cv/</loc><lastmod>2026-11-14T03:46:53+00:00</lastmod></url><url><loc>https://www.robertpetit.com/tags/django/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/django-kmer-test/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/django-steamboat/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/dragonflye/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/ena-dl/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/fastq-dl/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/fastq-scan/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/genome-dl/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/gigatyper/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/goblin/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/illumina-cleanup/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/illumina-simulation/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/nf-bactopia/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/pasty/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/pbptyper/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/pmga/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/publication/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/s3tools/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/sa-gene-prediction-experiment/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/sccmec/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/readme/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/shovill-se/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/sizemeup/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/software/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/staphopia/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/staphopia-r/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/staphopia-sccmec/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/staphopia-web/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/starcluster-plugins/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/steamboat-py/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/tbl2asn-forever/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/software/vcf-annotator/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/volunteer/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url><url><loc>https://www.robertpetit.com/volunteer/volunteer/</loc><lastmod>2026-11-14T03:53:12+00:00</lastmod></url></urlset>